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Current Individuals

This is a list of the current individuals that help develop and maintain ProteomeCommons.org. If you would like to help with the site or discuss collaborations, these are the people to talk to.

• Phil Andrews
• Jayson Falkner
• Pete Ulintz
• Matthew Osher
• Rakin Ahmed

Past

These are the individuals who have helped with ProteomeCommons.org and moved on. We wish to thank them for their work and wish the best of luck with the projects they have moved on to.

• Ben Philips

Publications

This should be the current set of references for publications relating to ProteomeCommons.org. Please use these references when citing this website. Formal citations is possibly the best thing you can do to help support our efforts.

Jayson A. Falkner, Peter J. Ulintz, and Philip C. Andrews, "A Code and Data Archival and Dissemination Tool for the Proteomics Community", American Biotechnology Laboratory, Apr, 2006

Falkner JA, Falkner JW, Andrews PC, "ProteomeCommons.org JAF: reference information and tools for proteomics", Bioinformatics 2006 22(5):632-633; doi:10.1093/bioinformatics/btk015

Falkner JA, Falkner JW, Andrews PC, "ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats", Bioinformatics, in publication

Jayson A. Falkner, Donna M. Veine, Maureen Kachman, Angela Walker, John R.Strahler, and Philip C. Andrews, "Validated MALDI-TOF/TOF mass spectra for protein standards", Invited for submission and submitted to JASMS

Falkner JA, Andrews PC, "Publicly dissemination large amounts of proteomics data in a secure and scalable fashion", http://www.proteomecommons.org/dev/dfs/

Posters/Presentations/Writeups

This is a list we maintain about articles, presentations, and other information describing ProteomeCommons.org and related projects. Many of these links are posters or talks that people from Philip Andrews' lab have given, but links are also included to talks and writeups from others..

2007

• MSNBC article regarding T. rex bone analysis references ProteomeCommons.org
• Deepak Singh's blog entry: ProteomeCommons.org Tranche - A commons for proteomics data
• US HUPO 2007 in Seattle, WA: ProteomeCommons.org Tranche Poster
• JPR writeup of the ProteomeCommons.org IO Framework (PDF)
• NIST Invited Presentation: ProteomeCommons.org Tranche and Bonanza -- slides on-line soon
• Bioinformatics Winter Kick-off: Data dissemination and analysis in proteomics -- slides on-line soon

2006

• caBIG Special Interest Group Presentation: ProteomeCommons.org Tranche
• HUPO 2006, Long Beach
• J. A. Falkner, P.C. Andrews, "ProteomeCommons.org Tranche: Publicly storing and sharing large amounts of proteomics data"
• US HUPO 2006, Boston
• ABRF 2006, Long Beach
• J. A. Falkner, P.C. Andrews, "Open Access, Peer Reviewed, Peer-to-Peer Based Proteomics Data Dissemination and Archival System"
• ASMS 2006, Seattle
• J. A. Falkner, P.C. Andrews, "Open Access, Peer Reviewed, Peer-to-Peer Based Proteomics Data Dissemination and Archival System"

2005

• ASMS 2005, San Antonio
• Philip Andrews and Jayson Falkner, "ProteomeCommons.org: A resource for free, public proteome informatics software and data"
• Jayson A Falkner; Michael Flanagan; Donghui Yi; Philip Andrews, "Simultaneous Fragmentation of Multiple Peptides by High Performance ESI-oaTOF coupled with Advanced Software Algorithm for Peptide Deconvolution and Protein Identification"
• Angela K Walker, Jayson A Falkner, Philip C Andrews, "Strategies for de novo interpretation of peptide sequence using MS/MS data and chemical techniques"
• John R Strahler, Donna Veine, Angela Walker, Maureen Kachman, Peter Ulintz, Jayson Falkner and Philip C Andrews, "A publicly available dataset of MALDI-TOF/TOF mass spectra of known proteins"

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